Yes - happy to help with this and glad you reported it. I might need a few days since I’m at a conference this week - but if you have a deadline please let me know.
And, can you email me the full un-redacted logs or the domain name of the site so I can look it up? I think you have my address. I suspect it is getting confused with our symlinked home directories - the official home directory is /home/sites/ - but this is a symlink to /media/dataNNNN/sites/.
I’ll have to experiment to be sure. I’m committed to ensuring Civi stand alone can be installed so we will get this to work one way or another even if I have to submit a patch upstream
$ cd ~/web
$ curl -O https://storage.googleapis.com/civicrm/civicrm-stable/6.6.1/civicrm-6.6.1-standalone.tar.gz
$ tar -xvzf civicrm-6.6.1-standalone.tar.gz
$ mv civicrm-standalone/* .
# make sure .htaccess was copied to the web root
# load URL in browser, enter DB info and submit form
# 404 error
$ cv en standaloneusers
> Enabling extension "standaloneusers"
$ cv core:install --url=... --lang="en_US" --db="mysql://user:pass@127.0.0.1:3306/db" -m extras.adminUser=... -m extras.adminPass=... -m extras.adminEmail=... -vv
> The civicrm.settings.php already exists. What you like to do? [a] Abort [k] Keep [o] Overwrite
$ k
> The database tables already exists. What you like to do? [a] Abort [k] Keep [o] Overwrite
$ o
4. Log in!
…and after all of this, when I navigated to the URL it correctly loaded the login form, but the passwords I entered didn’t seem to work…
Navigate to the password reset form, enter email address and submit form
Receive a password reset email (the email sent from info@EXAMPLE.ORG with the subject line “Password reset link for Default Domain Name” and went to my RoundCube webmail spam folder).
Reset the password from the emailed link
Log in and view the Organization Setup steps, etc…